Update openmpi

openmpi/PKGBUILD

@@ -1,16 +1,10 @@
 #
 # Core Packages for Chakra, part of chakra-project.org
 #
-# maintainer (i686): Phil Miller <philm[at]chakra-project[dog]org>
-# maintainer (x86_64): Drake Justice <djustice[at]chakra-project[dot]org>
-
-# include global config
-source ../_buildscripts/${current_repo}-${_arch}-cfg.conf
-
 
 pkgname=openmpi
-pkgver=1.5.4
+pkgver=1.5.5
-pkgrel=2
+pkgrel=1
 pkgdesc="High performance message passing library (MPI)"
 arch=('i686' 'x86_64')
 url="http://www.open-mpi.org"
@@ -18,12 +12,17 @@ license=('custom')
 depends=('gcc' 'gcc-fortran' 'openssh' 'valgrind' 'libtool' 'hwloc')
 makedepends=('inetutils')
 options=(!libtool)
-source=(http://www.open-mpi.org/software/ompi/v1.5/downloads/${pkgname}-${pkgver}.tar.bz2)
+source=(http://www.open-mpi.org/software/ompi/v1.5/downloads/${pkgname}-${pkgver}.tar.bz2
-sha1sums=('81f7736a83b2134ba20c2e5c380b4d267cfd9d9c')
+        openmpi-1.5.4-fix-fakeroot-execution.patch)
+sha1sums=('206e555f6d376443f2342f721d944e67dd1a04ef'
+          '3161fce9870e02211dadbc0993b7805e2e811440')
 
 build() {
    cd "${srcdir}/${pkgname}-${pkgver}"
 
+   # Fix fakeroot
+   patch -p1 -i $srcdir/openmpi-1.5.4-fix-fakeroot-execution.patch
+
    ./configure --prefix=/usr \
                --sysconfdir=/etc/${pkgname} \
                --mandir=/usr/share/man \
@@ -36,7 +35,7 @@ build() {
                --enable-debug \
                --enable-pretty-print-stacktrace \
                --without-slurm \
-               --with-hwloc=external \
+               --with-hwloc=/usr \
                --with-libltdl=/usr \
                FC=/usr/bin/gfortran \
                LDFLAGS="$LDFLAGS -Wl,-z,noexecstack"
@@ -48,13 +47,18 @@ package() {
    cd "${srcdir}/${pkgname}-${pkgver}"
    make DESTDIR="${pkgdir}" install
 
+   install -d -m 755 "${pkgdir}"/usr/lib/pkgconfig
+   for i in ompi-c.pc ompi-cxx.pc ompi-f77.pc ompi-f90.pc ompi.pc; do
+      ln -sf /usr/lib/openmpi/pkgconfig/$i "${pkgdir}"/usr/lib/pkgconfig/
+   done
+
    # Openmpi's otfinfo conflicts with the one from texlive
-   mv "${pkgdir}"/usr/bin/otfinfo "${pkgdir}"/usr/bin/otfinfompi
+   mv "${pkgdir}"/usr/bin/otfinfo{,mpi}
 
    # Openmpi's otfdump conflicts with the one from libotf
-   mv "${pkgdir}"/usr/bin/otfdump "${pkgdir}"/usr/bin/otfdumpompi
+   mv "${pkgdir}"/usr/bin/otfdump{,ompi}
 
-   # Symlink points to non-existing ortec++.1
+   # Remove dangling symlink
    rm "${pkgdir}"/usr/share/man/man1/orteCC.1
 
    install -d -m 755 "${pkgdir}"/etc/ld.so.conf.d
@@ -62,4 +66,3 @@ package() {
 
    install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/${pkgname}/LICENSE
 }
-

openmpi/openmpi-1.5.4-fix-fakeroot-execution.patch

@@ -0,0 +1,42 @@
+Description: If running under Debian fakeroot then its important
+ that this hook is disabled; a new stat check was introduced in
+ 1.5.x which preceeds the FAKEROOT check resulting in a SEGFAULT.
+Author: James Page <james.page@ubuntu.com>
+Origin: https://svn.open-mpi.org/trac/ompi/changeset/21489
+
+Index: openmpi-1.5.4/opal/mca/memory/linux/hooks.c
+===================================================================
+--- openmpi-1.5.4.orig/opal/mca/memory/linux/hooks.c    2012-02-15 12:59:39.986314651 +0000
++++ openmpi-1.5.4/opal/mca/memory/linux/hooks.c 2012-02-15 13:14:57.744722517 +0000
+@@ -738,15 +738,6 @@
+     check_result_t r1, r2, lp, lpp;
+     bool want_rcache = false, found_driver = false;
+
+-    /* First, check if ummunotify is present on the system. If it is,
+-       then we don't need to do the following ptmalloc2 hacks.
+-       open/mmap on the device may fail during init, but if /dev/ummunotify
+-       exists, we assume that the user/administrator *wants* to use
+-       ummunotify. */
+-    if (stat("/dev/ummunotify", &st) == 0) {
+-        return;
+-    }
+-
+     /* Yes, checking for an MPI MCA parameter here is an abstraction
+        violation.  Cope.  Yes, even checking for *any* MCA parameter
+        here (without going through the MCA param API) is an
+@@ -769,6 +760,15 @@
+         return;
+     }
+
++    /* Next, check if ummunotify is present on the system. If it is,
++       then we don't need to do the following ptmalloc2 hacks.
++       open/mmap on the device may fail during init, but if /dev/ummunotify
++       exists, we assume that the user/administrator *wants* to use
++       ummunotify. */
++    if (stat("/dev/ummunotify", &st) == 0) {
++        return;
++    }
++
+     /* Look for sentinel files (directories) to see if various network
+        drivers are loaded (yes, I know, further abstraction
+        violations...).