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541 lines
20 KiB
XML
541 lines
20 KiB
XML
<?xml version="1.0" encoding="ISO-8859-1"?>
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<!DOCTYPE sect1 PUBLIC "-//OASIS//DTD DocBook XML V4.4//EN"
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"http://www.oasis-open.org/docbook/xml/4.4/docbookx.dtd" [
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<!ENTITY % general-entities SYSTEM "../../general.ent">
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%general-entities;
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<!ENTITY pdl-download-http "http://prdownloads.sourceforge.net/pdl/PDL-&pdl-version;.tar.gz">
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<!ENTITY pdl-download-ftp " ">
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<!ENTITY pdl-md5sum "edd056a006eae8b46e8ef804b9774a93">
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<!ENTITY pdl-size "2.1 MB">
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<!ENTITY pdl-buildsize "74 MB">
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<!ENTITY pdl-time "2.56 SBU">
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]>
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<sect1 id="pdl" xreflabel="PDL">
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<?dbhtml filename="pdl.html" ?>
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<sect1info>
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<othername>$LastChangedBy$</othername>
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<date>$Date$</date>
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</sect1info>
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<title>PDL-&pdl-version;</title>
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<indexterm zone="pdl">
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<primary sortas="a-PDL">PDL</primary>
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</indexterm>
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<sect2 role="package">
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<title>Introduction to PDL</title>
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<para><application>PDL</application> (Perl Data Language) gives
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standard <application>Perl</application> the ability to compactly store
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and quickly manipulate the large N-dimensional data arrays common to
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scientific computing. <application>PDL</application> turns
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<application>Perl</application> into an array-oriented, numerical language
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similar to such commerical packages as <application>IDL</application>
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and <application>MatLab</application>. One can write simple
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<application>Perl</application> expressions to manipulate entire numerical
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arrays all at once.</para>
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<para><application>PDL</application> provides extensive numerical and
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semi-numerical functionality with support for two- and three-dimensional
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visualisation as well as a variety of I/O formats. The goal is to allow
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<application>PDL</application> to interact with a variety of external numerical
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packages, graphics and visualisation systems. Easy interfacing to such systems
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is one of the core design features of <application>PDL</application>.</para>
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<bridgehead renderas="sect3">Package Information</bridgehead>
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<itemizedlist spacing="compact">
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<listitem>
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<para>Download (HTTP): <ulink url="&pdl-download-http;"/></para>
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</listitem>
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<listitem>
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<para>Download (FTP): <ulink url="&pdl-download-ftp;"/></para>
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</listitem>
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<listitem>
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<para>Download MD5 sum: &pdl-md5sum;</para>
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</listitem>
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<listitem>
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<para>Download size: &pdl-size;</para>
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</listitem>
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<listitem>
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<para>Estimated disk space required: &pdl-buildsize;</para>
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</listitem>
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<listitem>
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<para>Estimated build time: &pdl-time;</para>
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</listitem>
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</itemizedlist>
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<bridgehead renderas="sect3">PDL Dependencies</bridgehead>
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<para><application>PDL</application> is a collection of over 90
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<application>Perl</application> modules. Some of these modules require
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additional libraries and/or <application>Perl</application> modules for full
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functionality. Listed below are the modules which require additional software
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or configuration. If you don't need a particular module's functionality, you don't
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need to install its dependencies. The dependency tree for each module is listed
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downward, meaning you'll need to start at the bottom of a module's tree and work
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up. The dependencies are listed in the same order as they are in the
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<filename>DEPENDENCIES</filename> file, found in the package source tree.</para>
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<bridgehead renderas="sect4">PDL::NiceSlice</bridgehead>
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<para>The <application>PDL</application>::NiceSlice module is used to
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enhance <application>PDL</application>'s slice syntax. <quote>Slicing</quote>
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is a term used in the process of creating a cross-section, or slice, of a
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<application>PDL</application> object (piddle).</para>
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<itemizedlist spacing='compact'>
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<listitem>
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<para><ulink
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url="http://www.cpan.org/authors/id/P/PM/PMQS/Filter-&Filter-version;.tar.gz">
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Filter-&Filter-version;</ulink></para>
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</listitem>
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</itemizedlist>
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<bridgehead renderas="sect4">Inline::Pdlpp</bridgehead>
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<para>The Inline::Pdlpp module allows you to define fast PP
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code inline in your scripts.</para>
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<itemizedlist spacing='compact'>
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<listitem>
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<para><ulink
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url="http://www.cpan.org/authors/id/I/IN/INGY/Inline-&Inline-version;.tar.gz">
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Inline-&Inline-version;</ulink></para>
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<itemizedlist>
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<listitem>
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<para><ulink
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url="http://www.cpan.org/authors/id/D/DC/DCONWAY/Parse-RecDescent-&Parse-RecDescent-version;.tar.gz">
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Parse-RecDescent-&Parse-RecDescent-version;</ulink></para>
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</listitem>
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</itemizedlist>
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</listitem>
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</itemizedlist>
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<bridgehead renderas="sect4">Perldl</bridgehead>
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<para><command>perldl</command> is a simple shell (written in
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<application>Perl</application>) which allows interactive
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use of <application>PDL</application>.</para>
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<itemizedlist spacing='compact'>
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<listitem>
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<para><ulink
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url="http://www.cpan.org/authors/id/H/HA/HAYASHI/Term-ReadLine-Gnu-&Term-ReadLine-Gnu-version;.tar.gz">
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Term-ReadLine-Gnu-&Term-ReadLine-Gnu-version;</ulink></para>
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</listitem>
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</itemizedlist>
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<bridgehead renderas="sect4">PDL::Graphics::TriD</bridgehead>
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<para>The <application>PDL</application>::Graphics::TriD module implements
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a generic 3D plotting interface for <application>PDL</application>. Points,
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lines and surfaces (among other objects) are supported.</para>
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<itemizedlist spacing='compact'>
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<listitem>
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<para>OpenGL (<xref linkend="xfree86"/> or
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<xref linkend="xorg"/>)</para>
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</listitem>
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</itemizedlist>
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<bridgehead renderas="sect4">PDL::Graphics::PGPLOT</bridgehead>
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<para>The <application>PDL</application>::Graphics::PGPLOT module is a
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convenience interface to the <application>PGPLOT</application> commands,
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implemented using the object oriented <application>PGPLOT</application>
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plotting package in the <application>PDL</application>::Graphics::PGPLOT::Window
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module.</para>
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<itemizedlist spacing='compact'>
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<listitem>
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<para><ulink
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url="http://www.cpan.org/authors/id/K/KG/KGB/PGPLOT-&pgperl-version;.tar.gz">
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pgperl</ulink></para>
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<itemizedlist>
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<listitem>
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<para><ulink
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url="http://www.cpan.org/authors/id/K/KG/KGB/ExtUtils-F77-&ExtUtils-F77-version;.tar.gz">
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ExtUtils-F77-&ExtUtils-F77-version;</ulink></para>
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<itemizedlist>
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<listitem>
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<para><xref linkend="gcc"/> (Fortran compiler)</para>
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</listitem>
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</itemizedlist>
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</listitem>
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<listitem>
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<para><ulink
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url="http://www.astro.caltech.edu/~tjp/pgplot/">PGPLOT</ulink></para>
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<itemizedlist>
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<listitem>
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<para>X (<xref linkend="xfree86"/> or <xref linkend="xorg"/>),
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<xref linkend="lesstif"/>,
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<xref linkend="tk"/> and
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<xref linkend="gcc"/> (Fortran compiler)</para>
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</listitem>
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</itemizedlist>
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</listitem>
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</itemizedlist>
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</listitem>
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</itemizedlist>
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<bridgehead renderas="sect4">PDL::Graphics::PLPLOT</bridgehead>
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<para>The <application>PDL</application>::Graphics::PLPLOT module is a
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simple interface to the <application>PLplot</application> plotting library.</para>
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<itemizedlist spacing='compact'>
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<listitem>
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<para><ulink url="http://plplot.sourceforge.net/">PLplot</ulink></para>
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<itemizedlist>
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<listitem>
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<para><xref linkend="pkgconfig"/>,
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X (<xref linkend="xfree86"/> or <xref linkend="xorg"/>),
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<xref linkend="GTK"/>,
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<xref linkend="freetype2"/>,
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<ulink url="http://www.boutell.com/gd/">GD</ulink>,
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<ulink url="http://www.svgalib.org/">SVGAlib</ulink>,
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<xref linkend="gnome-libs"/>,
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<xref linkend="jdk"/>,
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<xref linkend="tk"/>,
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<xref linkend="python"/> (with the
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<ulink url="http://www.pfdubois.com/numpy/">Numerical Extension</ulink>),
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<xref linkend="gcc"/> (Fortran compiler),
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<ulink url="http://www.swig.org/">SWIG</ulink>,
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<ulink url="http://sourceforge.net/projects/incrtcl/">iTcl</ulink></para>
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</listitem>
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</itemizedlist>
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</listitem>
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</itemizedlist>
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<bridgehead renderas="sect4">PDL::Graphics::IIS</bridgehead>
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<para>The <application>PDL</application>::Graphics::IIS
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module provides an interface to any image display <quote>device</quote>
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which supports the <quote>IIS protocol</quote>.</para>
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<itemizedlist spacing='compact'>
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<listitem>
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<para><ulink
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url="http://tdc-www.harvard.edu/software/saoimage.html">SAOimage</ulink></para>
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<itemizedlist>
|
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<listitem>
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<para>X (<xref linkend="xfree86"/> or <xref linkend="xorg"/>)</para>
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</listitem>
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</itemizedlist>
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</listitem>
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<listitem>
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<para><ulink
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url="http://iraf.noao.edu/iraf/web/projects/x11iraf/x11iraf.html">X11
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IRAF</ulink></para>
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<itemizedlist>
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<listitem>
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<para>X (<xref linkend="xfree86"/> or <xref linkend="xorg"/>) and
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<xref linkend="tk"/></para>
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</listitem>
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</itemizedlist>
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</listitem>
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</itemizedlist>
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<bridgehead renderas="sect4">PDL::Graphics::Karma</bridgehead>
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<para>The <application>PDL</application>::Graphics::Karma
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module is an interface to <application>Karma</application> visualisation
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applications.</para>
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<itemizedlist spacing='compact'>
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<listitem>
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<para><ulink
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url="http://www.atnf.csiro.au/computing/software/karma/">Karma</ulink></para>
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<itemizedlist>
|
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<listitem>
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<para>X (<xref linkend="xfree86"/> or <xref linkend="xorg"/>)</para>
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</listitem>
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</itemizedlist>
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</listitem>
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</itemizedlist>
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<para><emphasis>Note:</emphasis> You may need to modify the
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<option>WHERE_KARMA => undef</option> line in the source tree
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<filename>perldl.conf</filename> file to point to your installation
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of <application>Karma</application></para>
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<bridgehead renderas="sect4">PDL::IO::Pic</bridgehead>
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<para> The <application>PDL</application>::IO::Pic module implements I/O
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for a number of popular image formats by exploiting the
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<command>xxxtopnm</command> and <command>pnmtoxxx</command>
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converters from the <application>Netpbm</application> package and the
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<command>cjpeg</command> and <command>djpeg</command> converters.
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It also contains the routine wmpeg to write MPEG movies from piddles
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representing image stacks.</para>
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<itemizedlist spacing='compact'>
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<listitem>
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<para><ulink url="http://netpbm.sourceforge.net/">Netpbm</ulink>,
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<xref linkend="libjpeg"/> and
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<ulink url="ftp://mm-ftp.cs.berkeley.edu/pub/multimedia/mpeg/encode/">
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mpeg_encode</ulink></para>
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</listitem>
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</itemizedlist>
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<bridgehead renderas="sect4">PDL::Slatec</bridgehead>
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<para> The <application>PDL</application>::Slatec module serves the dual
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purpose of providing an interface to parts of the slatec library and showing
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how to interface <application>PDL</application> to an external library.
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The module provides routines to manipulate matrices, calculate FFTs, fit
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data using polynomials, and interpolate/integrate data using piecewise
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cubic Hermite interpolation.</para>
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<itemizedlist spacing='compact'>
|
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<listitem>
|
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<para><ulink
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url="http://www.cpan.org/authors/id/K/KG/KGB/ExtUtils-F77-&ExtUtils-F77-version;.tar.gz">
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ExtUtils-F77-&ExtUtils-F77-version;</ulink></para>
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<itemizedlist>
|
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<listitem>
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<para><xref linkend="gcc"/> (Fortran compiler)</para>
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</listitem>
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</itemizedlist>
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</listitem>
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</itemizedlist>
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<bridgehead renderas="sect4">PDL::GSL</bridgehead>
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<para> The <application>PDL</application>::<application>GSL</application>
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module is an interface to the functions provided by the Gnu Scientific Library.</para>
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<itemizedlist spacing='compact'>
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<listitem>
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<para><ulink url="http://www.gnu.org/software/gsl/">GSL</ulink></para>
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</listitem>
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</itemizedlist>
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<bridgehead renderas="sect4">PDL::FFTW</bridgehead>
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<para> The <application>PDL</application>::<application>FFTW</application>
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module is a means to interface <application>PDL</application> with the
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<application>FFTW</application> library. It's similar to the standard FFT
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routine but it's usually faster and has support for real transforms. It works
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well for the types of piddles for which the library was compiled (otherwise it
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must do conversions).</para>
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<itemizedlist spacing='compact'>
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<listitem>
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<para><ulink url="http://www.fftw.org/">FFTW-2.x</ulink></para>
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</listitem>
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</itemizedlist>
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<bridgehead renderas="sect4">PDL::IO::Browser</bridgehead>
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<para>The <application>PDL</application>::IO::Browser module
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is a 2D cursor terminal data browser for piddles.</para>
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<para>There is no additional software required to use the module. However,
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the default is to not install the module because some platforms don't provide
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a curses compatible library. To enable the module, issue the following
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command:</para>
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<screen><userinput>sed -i -e "s/WITH_IO_BROWSER => 0/WITH_IO_BROWSER => 1/" \
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perldl.conf</userinput></screen>
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<bridgehead renderas="sect4">PDL::IO::NDF</bridgehead>
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<para>The <application>PDL</application>::IO::NDF module adds the ability to
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read and write Starlink N-dimensional data files as N-dimensional piddles.</para>
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<itemizedlist spacing='compact'>
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<listitem>
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<para><ulink
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url="http://www.cpan.org/authors/id/A/AA/AALLAN/Astro-FITS-Header-&Astro-FITS-Header-version;.tar.gz">
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Astro-FITS-Header-&Astro-FITS-Header-version;</ulink></para>
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<itemizedlist>
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<listitem>
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<para><ulink
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url="http://www.cpan.org/authors/id/P/PR/PRATZLAFF/Astro-FITS-CFITSIO-&Astro-FITS-CFITSIO-version;.tar.gz">
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Astro-FITS-CFITSIO-&Astro-FITS-CFITSIO-version;</ulink></para>
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<itemizedlist>
|
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<listitem>
|
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<para><ulink
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|
url="http://heasarc.gsfc.nasa.gov/docs/software/fitsio/">CFITSIO</ulink></para>
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</listitem>
|
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</itemizedlist>
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</listitem>
|
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<listitem>
|
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<para><ulink
|
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url="ftp://ftp.starlink.rl.ac.uk/pub/ussc/store/starperl/starperl.tar.Z">
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NDFPERL-&NDF-version;</ulink></para>
|
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<itemizedlist>
|
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<listitem>
|
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<para><ulink
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url="ftp://ftp.starlink.rl.ac.uk/pub/ussc/store/starperl/starperl.tar.Z">
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Starlink-Config-&Starlink-Config-version;</ulink></para>
|
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<itemizedlist>
|
|
<listitem>
|
|
<para><ulink url="http://star-www.rl.ac.uk/">Starlink IMG</ulink></para>
|
|
<itemizedlist>
|
|
<listitem>
|
|
<para><ulink url="http://star-www.rl.ac.uk/">Starlink NDF</ulink></para>
|
|
<itemizedlist>
|
|
<listitem>
|
|
<para><xref linkend="gcc"/> (Fortran compiler)</para>
|
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</listitem>
|
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</itemizedlist>
|
|
</listitem>
|
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</itemizedlist>
|
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</listitem>
|
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</itemizedlist>
|
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</listitem>
|
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</itemizedlist>
|
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</listitem>
|
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<listitem>
|
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<para><ulink
|
|
url="ftp://ftp.starlink.rl.ac.uk/pub/ussc/store/starperl/starperl.tar.Z">
|
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GSDPERL-&GSD-version;</ulink></para>
|
|
<itemizedlist>
|
|
<listitem>
|
|
<para><ulink
|
|
url="ftp://ftp.starlink.rl.ac.uk/pub/ussc/store/starperl/starperl.tar.Z">
|
|
Starlink-Config-&Starlink-Config-version;</ulink></para>
|
|
<itemizedlist>
|
|
<listitem>
|
|
<para><ulink
|
|
url="http://star-www.rl.ac.uk/">Starlink GSD</ulink></para>
|
|
<itemizedlist>
|
|
<listitem>
|
|
<para><xref linkend="gcc"/> (Fortran compiler)</para>
|
|
</listitem>
|
|
</itemizedlist>
|
|
</listitem>
|
|
</itemizedlist>
|
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</listitem>
|
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</itemizedlist>
|
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</listitem>
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</itemizedlist>
|
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</listitem>
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</itemizedlist>
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</sect2>
|
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|
|
<sect2 role="installation">
|
|
<title>Installation of PDL</title>
|
|
|
|
<para>Install <application>PDL</application> (and all the dependency
|
|
<application>Perl</application> modules) by running the following commands:</para>
|
|
|
|
<screen><userinput>perl Makefile.PL &&
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|
make &&
|
|
make test</userinput></screen>
|
|
|
|
<para>Now, as the <systemitem class="username">root</systemitem> user:</para>
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|
|
|
<screen role="root"><userinput>make install</userinput></screen>
|
|
|
|
</sect2>
|
|
|
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<sect2 role="configuration">
|
|
<title>Configuring PDL</title>
|
|
|
|
<sect3 id="pdl-config">
|
|
<title>Config Files</title>
|
|
|
|
<para><filename>~/.perldlrc</filename> and
|
|
<filename>local.perldlrc</filename> in the current directory</para>
|
|
|
|
<indexterm zone="pdl pdl-config">
|
|
<primary sortas="e-AA.perldlrc">~/.perldlrc</primary>
|
|
</indexterm>
|
|
|
|
<indexterm zone="pdl pdl-config">
|
|
<primary sortas="e-local.perldlrc">local.perldlrc</primary>
|
|
</indexterm>
|
|
|
|
</sect3>
|
|
|
|
<sect3>
|
|
<title>Configuration Information</title>
|
|
|
|
<para>See <ulink
|
|
url="http://pdl.sourceforge.net/PDLdocs/perldl.html#the startup file ~/.perldlrc"/>
|
|
for information about configuring <command>perldl</command> to suit your
|
|
needs.</para>
|
|
|
|
</sect3>
|
|
|
|
</sect2>
|
|
|
|
<sect2 role="content">
|
|
<title>Contents</title>
|
|
|
|
<segmentedlist>
|
|
<segtitle>Installed Programs</segtitle>
|
|
<segtitle>Installed Modules</segtitle>
|
|
<segtitle>Installed Directories</segtitle>
|
|
|
|
<seglistitem>
|
|
<seg>pdl, pdldoc, perldl, and pptemplate</seg>
|
|
<seg>90+ individual <application>Perl</application> modules</seg>
|
|
<seg>/usr/lib/perl5/site_perl/&LFS-Perl-version;/i686-linux/{,auto/}PDL</seg>
|
|
</seglistitem>
|
|
</segmentedlist>
|
|
|
|
<variablelist>
|
|
<bridgehead renderas="sect3">Short Descriptions</bridgehead>
|
|
<?dbfo list-presentation="list"?>
|
|
<?dbhtml list-presentation="table"?>
|
|
|
|
<varlistentry id="pdl-prog">
|
|
<term><command>pdl</command></term>
|
|
<listitem>
|
|
<para>is a binary program called from
|
|
<application>PDL</application> scripts which is used to
|
|
interface <command>perldl</command>.</para>
|
|
<indexterm zone="pdl pdl-prog">
|
|
<primary sortas="b-pdl">pdl</primary>
|
|
</indexterm>
|
|
</listitem>
|
|
</varlistentry>
|
|
|
|
<varlistentry id="pdldoc">
|
|
<term><command>pdldoc</command></term>
|
|
<listitem>
|
|
<para>is a shell interface to
|
|
<application>PDL</application> documentation.</para>
|
|
<indexterm zone="pdl pdldoc">
|
|
<primary sortas="b-pdldoc">pdldoc</primary>
|
|
</indexterm>
|
|
</listitem>
|
|
</varlistentry>
|
|
|
|
<varlistentry id="perldl">
|
|
<term><command>perldl</command></term>
|
|
<listitem>
|
|
<para>is a simple shell (written in <application>Perl</application>)
|
|
for interactive use of <application>PDL</application>.</para>
|
|
<indexterm zone="pdl perldl">
|
|
<primary sortas="b-perldl">perldl</primary>
|
|
</indexterm>
|
|
</listitem>
|
|
</varlistentry>
|
|
|
|
<varlistentry id="pptemplate">
|
|
<term><command>pptemplate</command></term>
|
|
<listitem>
|
|
<para>is a script to generate <filename>Makefile.PL</filename>
|
|
and PP file skeletons.</para>
|
|
<indexterm zone="pdl pptemplate">
|
|
<primary sortas="b-pptemplate">pptemplate</primary>
|
|
</indexterm>
|
|
</listitem>
|
|
</varlistentry>
|
|
|
|
</variablelist>
|
|
|
|
</sect2>
|
|
|
|
</sect1>
|